Jailhouse
As usual with free software, the situation is getting better with time, but there is one other thing—security. Sensitive software systems go through rigorous certifications (like Common Criteria) or even formal verification procedures. If you want them to run virtualized (say, for consolidation purposes), the hypervisor must isolate them from non-certifiable workloads. This implies that the hypervisor itself must be small enough; otherwise, it may end up being larger (and more "suspicious") than the software it segregates, thus devastating the whole idea of isolation.
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