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Sci/Tech

From lab to libre software: how can academic software research become open source?

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OSS
Sci/Tech

Academics generate enormous amounts of software, some of which inspires commercial innovations in networking and other areas. But little academic software gets released to the public and even less enters common use. Is some vast "dark matter" being overlooked in the academic community? Would the world benefit from academics turning more of their software into free and open projects?

I asked myself these questions a few months ago when Red Hat, at its opening of a new innovation center in Boston's high-tech Fort Point neighborhood, announced a unique partnership with the goal of tapping academia. Red Hat is joining with Boston-area computer science departments—starting with Boston University—to identify promising software developed in academic projects and to turn it into viable free-software projects. Because all software released by Red Hat is under free licenses, the partnership suggests a new channel by which academic software could find wider use.

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FOSS in Science: Harvard, Xiaopeng, Georgia Tech

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  • Making transparency work for Harvard's Dataverse Project

    A culture of transparency permeates the Dataverse project, contributing to its adoption in dozens of research institutions around the world. Headquartered at Harvard University, the Dataverse development team has more than a decade of experience operating as an open source project within an organization that values transparency: the Institute of Quantitative Social Science (IQSS). Working transparently helps the Dataverse team communicate changes to current development efforts, provides opportunities for the community to support each other, and facilitates contribution to the project.

  • Chinese Startup Goes All Out Cloning Tesla Via Open-Source Patents

    Thanks to Tesla’s decision to open-source its patents, Chinese startup Xiaopeng Motors has already manufactured several Model X clones.

  • Open Source Machine Learning Helps the Fight Against Cancer

    Here's an open invitation to steal. It goes out to cancer fighters and tempts them with a new program that predicts cancer drug effectiveness via machine learning and raw genetic data.

    The researchers who built the program at the Georgia Institute of Technology would like cancer fighters to take it for free, or even just swipe parts of their programming code, so they've made it open source. They hope to attract a crowd of researchers who will also share their own cancer and computer expertise and data to improve upon the program and save more lives together.

  • Georgia Tech researchers release open-source AI algorithm to predict effectiveness of cancer drugs

    A team of researchers from Atlanta-based Georgia Institute of Technology introduced an open-source algorithm Oct. 26 that predicts a cancer drug's effectiveness based on a patient's genetic data.

    The researchers developed the machine learning algorithm using gene expression and drug response data from the National Cancer Institute's panel of 60 human cancer cell lines. Their goal was to create an algorithm that predicts optimal drug therapies based on individual patient tumors.

    In a study of 273 cancer patients, researchers found the algorithm to be about 85 percent accurate in assessing the effectiveness of nine drugs. By releasing the algorithm on an open-source platform, they hope other researchers will participate in refining their work.

KStars 2.8.7 Released!

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KDE
Sci/Tech

Another minor KStars release is now available for Linux, MacOS, & Windows. KStars 2.8.7 brings several bug fixes and new improvements!

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KStars 2.8.5 is released!

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KDE
Software
Sci/Tech

So here comes another minor release for KStars v2.8.5 just less than two weeks after 2.8.4 was released. KStars v2.8.5 is available for Windows, MacOS, and Linux.

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Release GCompris Qt 0.80

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KDE
Sci/Tech

We are pleased to announce the release of GCompris version 0.80.

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Fake News From Fossbytes and Techworm

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Software
Sci/Tech

Artificial intelligence/Machine learning

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OSS
Sci/Tech
  • Is your AI being handed to you by Google? Try Apache open source – Amazon's AWS did

    Surprisingly, the MXNet Machine Learning project was this month accepted by the Apache Software Foundation as an open-source project.

    What's surprising about the announcement isn't so much that the ASF is accepting this face in the crowd to its ranks – it's hard to turn around in the software world these days without tripping over ML tools – but rather that MXNet developers, most of whom are from Amazon, believe ASF is relevant.

  • Current Trends in Tools for Large-Scale Machine Learning

    During the past decade, enterprises have begun using machine learning (ML) to collect and analyze large amounts of data to obtain a competitive advantage. Now some are looking to go even deeper – using a subset of machine learning techniques called deep learning (DL), they are seeking to delve into the more esoteric properties hidden in the data. The goal is to create predictive applications for such areas as fraud detection, demand forecasting, click prediction, and other data-intensive analyses.

  • Your IDE won't change, but YOU will: HELLO! Machine learning

    Machine learning has become a buzzword. A branch of Artificial Intelligence, it adds marketing sparkle to everything from intrusion detection tools to business analytics. What is it, exactly, and how can you code it?

  • Artificial intelligence: Understanding how machines learn

    Learning the inner workings of artificial intelligence is an antidote to these worries. And this knowledge can facilitate both responsible and carefree engagement.

  • Your future boss? An employee-interrogating bot – it's an open-source gift from Dropbox

    Dropbox has released the code for the chatbot it uses to question employees about interactions with corporate systems, in the hope that it can help other organizations automate security processes and improve employee awareness of security concerns.

    "One of the hardest, most time-consuming parts of security monitoring is manually reaching out to employees to confirm their actions," said Alex Bertsch, formerly a Dropbox intern and now a teaching assistant at Brown University, in a blog post. "Despite already spending a significant amount of time on reach-outs, there were still alerts that we didn't have time to follow up on."

Scientific Linux 7.3 Released

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Red Hat
Sci/Tech
  • Scientific Linux 7.3 Officially Released, Based on Red Hat Enterprise Linux 7.3

    After two Release Candidate (RC) development builds, the final version of the Scientific Linux 7.3 operating system arrived today, January 26, 2017, as announced by developer Pat Riehecky.

    Derived from the freely distributed sources of the commercial Red Hat Enterprise Linux 7.3 operating system, Scientific Linux 7.3 includes many updated components and all the GNU/Linux/Open Source technologies from the upstream release.

    Of course, all of Red Hat Enterprise Linux's specific packages have been removed from Scientific Linux, which now supports Scientific Linux Contexts, allowing users to create local customization for their computing needs much more efficiently than before.

  • Scientific Linux 7.3 Released

    For users of Scientific Linux, the 7.3 release is now available based off Red Hat Enterprise Linux 7.3.

The code that took America to the moon was just published to GitHub, and it’s like a 1960s time capsule

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OSS
Sci/Tech

When programmers at the MIT Instrumentation Laboratory set out to develop the flight software for the Apollo 11 space program in the mid-1960s, the necessary technology did not exist. They had to invent it.

They came up with a new way to store computer programs, called “rope memory,” and created a special version of the assembly programming language. Assembly itself is obscure to many of today’s programmers—it’s very difficult to read, intended to be easily understood by computers, not humans. For the Apollo Guidance Computer (AGC), MIT programmers wrote thousands of lines of that esoteric code.

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More in Tux Machines

Security: Uber, Replacing x86 Firmware, 'IoT' and Chromebook

  • Key Dem calls for FTC to investigate Uber data breach

    A key Democrat is calling on the Federal Trade Commission (FTC) to investigate a massive Uber breach that released data on 57 million people, as well as the company's delay in reporting the cyber incident.

  • Multiple states launch probes into massive Uber breach
  • Replacing x86 firmware with Linux and Go

    The problem, Minnich said, is that Linux has lost its control of the hardware. Back in the 1990s, when many of us started working with Linux, it controlled everything in the x86 platform. But today there are at least two and a half kernels between Linux and the hardware. Those kernels are proprietary and, not surprisingly, exploit friendly. They run at a higher privilege level than Linux and can manipulate both the hardware and the operating system in various ways. Worse yet, exploits can be written into the flash of the system so that they persist and are difficult or impossible to remove—shredding the motherboard is likely the only way out.

  • Connected sex-toy allows for code-injection attacks on a robot you wrap around your genitals

    However, the links included base-64 encoded versions of the entire blowjob file, making it vulnerable to code-injection attacks. As Lewis notes, "I will leave you to ponder the consequences of having an XSS vulnerability on a page with no framebusting and preauthed connection to a robot wrapped around or inside someones genitals..."

  • Chromebook exploit earns researcher second $100k bounty
    For Google’s bug bounty accountants, lightning just struck twice. In September 2016, an anonymous hacker called Gzob Qq earned $100,000 (£75,000) for reporting a critical “persistent compromise” exploit of Google’s Chrome OS, used by Chromebooks. Twelve months on and the same researcher was wired an identical pay out for reporting – yes! – a second critical persistent compromise of Google’s Chrome OS. By this point you might think Google was regretting its 2014 boast that it could confidently double its maximum payout for Chrome OS hacks to $100,000 because “since we introduced the $50,000 reward, we haven’t had a successful submission.” More likely, it wasn’t regretting it at all because isn’t being told about nasty vulnerabilities the whole point of bug bounties?
  • Why microservices are a security issue
    And why is that? Well, for those of us with a systems security bent, the world is an interesting place at the moment. We're seeing a growth in distributed systems, as bandwidth is cheap and latency low. Add to this the ease of deploying to the cloud, and more architects are beginning to realise that they can break up applications, not just into multiple layers, but also into multiple components within the layer. Load balancers, of course, help with this when the various components in a layer are performing the same job, but the ability to expose different services as small components has led to a growth in the design, implementation, and deployment of microservices.

Lumina 1.4 Desktop Environment Debuts with New Theme Engine and ZFS Integrations

Lumina 1.4.0 is a major release that introduces several new core components, such as the Lumina Theme Engine to provide enhanced theming capabilities for the desktop environment and apps written in the Qt 5 application framework. The Lumina Theme Engine comes with a configuration utility and makes the previous desktop theme system obsolete, though it's possible to migrate your current settings to the new engine. "The backend of this engine is a standardized theme plugin for the Qt5 toolkit, so that all Qt5 applications will now present a unified appearance (if the application does not enforce a specific appearance/theme of it’s own)," said the developer in today's announcement. "Users of the Lumina desktop will automatically have this plugin enabled: no special action is required." Read more

today's leftovers

  • qBittorrent 4.0 Is a Massive Update of the Open-Source BitTorrent Client
    qBittorrent, the open-source and cross-platform BitTorrent client written in Qt for GNU/Linux, macOS, and Windows systems, has been updated to version 4.0, a major release adding numerous new features and improvements. qBittorrent 4.0 is the first release of the application to drop OS/2 support, as well as support for the old Qt 4 framework as Qt 5.5.1 or later is now required to run it on all supported platforms. It also brings a new logo and a new SVG-based icon theme can be easily scaled. Lots of other cosmetic changes are present in this release, and the WebGUI received multiple enhancements.
  • FFmpeg Continues Working Its "NVDEC" NVIDIA Video Decoding Into Shape
    Earlier this month the FFmpeg project landed its initial NVDEC NVIDIA video decoding support after already supporting NVENC for video encoding. These new NVIDIA APIs for encode/decode are part of the company's Video Codec SDK with CUDA and is the successor to the long-used VDPAU video decoding on NVIDIA Linux boxes. That NVDEC support has continued getting into shape.
  • Kobo firmware 4.6.10075 mega update (KSM, nickel patch, ssh, fonts)
    A new firmware for the Kobo ebook reader came out and I adjusted the mega update pack to use it. According to the comments in the firmware thread it is working faster than previous releases. The most incredible change though is the update from wpa_supplicant 0.7.1 (around 2010) to 2.7-devel (current). Wow.
  • 3.5-inch Apollo Lake SBC has dual mini-PCIe slots and triple displays
    Avalue’s Linux-friendly, 3.5-inch “ECM-APL2” SBC features Apollo Lake SoCs, 2x GbE, 4x USB 3.0, 2x mini-PCIe, triple displays, and optional -40 to 85°C. Avalue’s 3.5-inch, Apollo Lake based ECM-APL single-board computer was announced a year ago, shortly after Intel unveiled its Apollo Lake generation. Now it has followed up with an ECM-APL2 3.5-incher with a slightly different, and reduced, feature set.
  • 7 Best Android Office Apps To Meet Your Productivity Needs
    Office application is an essential suite that allows you to create powerful spreadsheets, documents, presentations, etc., on a smartphone. Moreover, Android office apps come with cloud integration so that you can directly access the reports from the cloud, edit them, or save them online. To meet the productivity need of Android users, the Play Store offers an extensive collection of Android office apps. But, we have saved you the hassle of going through each one of them and provided you a list of the best office apps for Android. The apps that we have picked are all free, although some do have Pro version or extra features available for in-app purchases. You can also refer to this list if you’re looking for Microsoft Office alternatives for your PC.

Servers and Red Hat